Genome-Wide Identification of Mitogen-Activated Protein Kinase Gene Family across Fungal Lineage Shows Presence of Novel and Diverse Activation Loop Motifs
Identifieur interne : 000642 ( Main/Exploration ); précédent : 000641; suivant : 000643Genome-Wide Identification of Mitogen-Activated Protein Kinase Gene Family across Fungal Lineage Shows Presence of Novel and Diverse Activation Loop Motifs
Auteurs : Tapan Kumar Mohanta [Corée du Sud] ; Nibedita Mohanta [Inde] ; Pratap Parida [Inde] ; Sujogya Kumar Panda [Inde] ; Lakshmi Narayanan Ponpandian [Corée du Sud] ; Hanhong Bae [Corée du Sud]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
The mitogen-activated protein kinase (MAPK) is characterized by the presence of the T-E-Y, T-D-Y, and T-G-Y motifs in its activation loop region and plays a significant role in regulating diverse cellular responses in eukaryotic organisms. Availability of large-scale genome data in the fungal kingdom encouraged us to identify and analyse the fungal MAPK gene family consisting of 173 fungal species. The analysis of the MAPK gene family resulted in the discovery of several novel activation loop motifs (T-T-Y, T-I-Y, T-N-Y, T-H-Y, T-S-Y, K-G-Y, T-Q-Y, S-E-Y and S-D-Y) in fungal MAPKs. The phylogenetic analysis suggests that fungal MAPKs are non-polymorphic, had evolved from their common ancestors around 1500 million years ago, and are distantly related to plant MAPKs. We are the first to report the presence of nine novel activation loop motifs in fungal MAPKs. The specificity of the activation loop motif plays a significant role in controlling different growth and stress related pathways in fungi. Hence, the presences of these nine novel activation loop motifs in fungi are of special interest.
Url:
DOI: 10.1371/journal.pone.0149861
PubMed: 26918378
PubMed Central: 4769017
Affiliations:
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North Orissa University; Baripada, Odisha, 757003, India</addr-line></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Zoology; North Orissa University; Baripada, Odisha, 757003</wicri:regionArea><wicri:noRegion>757003</wicri:noRegion></affiliation></author><author><name sortKey="Ponpandian, Lakshmi Narayanan" sort="Ponpandian, Lakshmi Narayanan" uniqKey="Ponpandian L" first="Lakshmi Narayanan" last="Ponpandian">Lakshmi Narayanan Ponpandian</name><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749, Republic of Korea</addr-line></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749</wicri:regionArea><wicri:noRegion>712749</wicri:noRegion></affiliation></author><author><name sortKey="Bae, Hanhong" sort="Bae, Hanhong" uniqKey="Bae H" first="Hanhong" last="Bae">Hanhong Bae</name><affiliation wicri:level="1"><nlm:aff id="aff005"><addr-line>School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749, Republic of Korea</addr-line></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, 712749</wicri:regionArea><wicri:noRegion>712749</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The mitogen-activated protein kinase (MAPK) is characterized by the presence of the T-E-Y, T-D-Y, and T-G-Y motifs in its activation loop region and plays a significant role in regulating diverse cellular responses in eukaryotic organisms. Availability of large-scale genome data in the fungal kingdom encouraged us to identify and analyse the fungal MAPK gene family consisting of 173 fungal species. The analysis of the MAPK gene family resulted in the discovery of several novel activation loop motifs (T-T-Y, T-I-Y, T-N-Y, T-H-Y, T-S-Y, K-G-Y, T-Q-Y, S-E-Y and S-D-Y) in fungal MAPKs. The phylogenetic analysis suggests that fungal MAPKs are non-polymorphic, had evolved from their common ancestors around 1500 million years ago, and are distantly related to plant MAPKs. We are the first to report the presence of nine novel activation loop motifs in fungal MAPKs. The specificity of the activation loop motif plays a significant role in controlling different growth and stress related pathways in fungi. Hence, the presences of these nine novel activation loop motifs in fungi are of special interest.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Sinha, Ak" uniqKey="Sinha A">AK Sinha</name></author><author><name sortKey="Jaggi, M" uniqKey="Jaggi M">M Jaggi</name></author><author><name sortKey="Raghuram, B" uniqKey="Raghuram B">B Raghuram</name></author><author><name sortKey="Tuteja, N" uniqKey="Tuteja N">N Tuteja</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hamel, L P" uniqKey="Hamel L">L-P Hamel</name></author><author><name sortKey="Nicole, M C" uniqKey="Nicole M">M-C Nicole</name></author><author><name sortKey="Sritubtim, S" uniqKey="Sritubtim S">S Sritubtim</name></author><author><name sortKey="Morency, M J" uniqKey="Morency M">M-J Morency</name></author><author><name sortKey="Ellis, M" uniqKey="Ellis M">M Ellis</name></author><author><name sortKey="Ehlting, J" uniqKey="Ehlting J">J 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Simonsen</name></author><author><name sortKey="Churchill, Ga" uniqKey="Churchill G">GA Churchill</name></author><author><name sortKey="Aquadro, Cf" uniqKey="Aquadro C">CF Aquadro</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Corée du Sud</li><li>Inde</li></country></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Mohanta, Tapan Kumar" sort="Mohanta, Tapan Kumar" uniqKey="Mohanta T" first="Tapan Kumar" last="Mohanta">Tapan Kumar Mohanta</name></noRegion><name sortKey="Bae, Hanhong" sort="Bae, Hanhong" uniqKey="Bae H" first="Hanhong" last="Bae">Hanhong Bae</name><name sortKey="Ponpandian, Lakshmi Narayanan" sort="Ponpandian, Lakshmi Narayanan" uniqKey="Ponpandian L" first="Lakshmi Narayanan" last="Ponpandian">Lakshmi Narayanan Ponpandian</name></country><country name="Inde"><noRegion><name sortKey="Mohanta, Nibedita" sort="Mohanta, Nibedita" uniqKey="Mohanta N" first="Nibedita" last="Mohanta">Nibedita Mohanta</name></noRegion><name sortKey="Panda, Sujogya Kumar" sort="Panda, Sujogya Kumar" uniqKey="Panda S" first="Sujogya Kumar" last="Panda">Sujogya Kumar Panda</name><name sortKey="Parida, Pratap" sort="Parida, Pratap" uniqKey="Parida P" first="Pratap" last="Parida">Pratap Parida</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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